PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG048300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 392aa    MW: 41231 Da    PI: 4.9484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG048300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.32.7e-18201247455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn+ ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  Pavir.2KG048300.2.p 201 VHNMSERRRRDRINEKMRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 247
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.67E-19192251No hitNo description
SuperFamilySSF474599.55E-22195262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.743197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-22201256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-15201247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-18203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDGGERPAAT QKRPFPPDGE LVELLWQDGA VVAHSQAAQR AVAGAGNTGA SGVTGEAAAW  60
LPGGGALGGD VYSQLWQSIA QADGRVGARP PARSGNSAAG SSRTAGEVGS SFCGSNLVAA  120
ARHLDDDIDD VAALPPPPPP GDEPGACGGA STSSGWNSNA LLKRSRDELD FRSEDADLDT  180
VDETPASRRP ASKRRTRAAE VHNMSERRRR DRINEKMRAL QELVPHCNKT DKASILDEAI  240
EYLKSLQMQV QIMWMSTGMA PMMLPGAHQL MPPMSMGLNS AYMPPAAQFL SQIQTVPPFL  300
SNPLPNQIPQ ISPASTSAPN VTNQVQSNRM AQPRNPFLHP NDALTSTPQL PSLFGYGPQM  360
AQENAIQELL ACTAAPALDA EQLSSSDGTG T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192209KRRTRAAEVHNMSERRRR
2205210ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955437.10.0PREDICTED: transcription factor PIF4-like
TrEMBLK3ZTU80.0K3ZTU8_SETIT; Uncharacterized protein
STRINGSi030028m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-33phytochrome interacting factor 3